Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THCA | rs1802353 | chr1:6284680 | C/T | 8.12E-5 | 477 | 15.9 | 15.3 | 3.27 | KM Plot |
THCA | rs1809627 | chr7:129971188 | G/A | 9.49E-5 | 486 | 16.63 | 15.33 | 14.83 | KM Plot |
THCA | rs1810346 | chr1:224380549 | A/G | 7.69E-5 | 489 | 16.67 | 14.63 | 13.8 | KM Plot |
THCA | rs181099388 | chr4:39462030 | T/G | 6.11E-15 | 484 | 15.97 | 16.38 | 6.1 | KM Plot |
THCA | rs1812035 | chr19:43563982 | A/G | 0.000237 | 489 | 15.3 | 18.93 | 10.08 | KM Plot |
THCA | rs181607144 | chr10:81726892 | C/G | 0.000202 | 486 | 16.22 | 15.83 | 13.5 | KM Plot |
THCA | rs181778593 | chr11:62609023 | T/G | 7.55E-5 | 488 | 16.27 | 14.33 | 14.27 | KM Plot |
THCA | rs181951924 | chr14:24663105 | G/A | 3.19E-10 | 481 | 15.65 | 16.67 | 13.85 | KM Plot |
THCA | rs182218 | chr1:91856072 | C/T | 2.08E-7 | 490 | 15.33 | 17.13 | 17.07 | KM Plot |
THCA | rs1823868 | chr1:91797303 | A/C | 7.73E-6 | 490 | 15.67 | 17 | 17.77 | KM Plot |
THCA | rs182662226 | chr2:121046830 | T/G | 2.85E-5 | 486 | 15.33 | 17.03 | 18.85 | KM Plot |
THCA | rs1834481 | chr11:112023827 | C/G | 2.34E-5 | 490 | 10.4 | 16.27 | 15.9 | KM Plot |
THCA | rs184664813 | chr16:15172676 | T/C | 1.51E-5 | 484 | 16.6 | 14.05 | 16.33 | KM Plot |
THCA | rs184678146 | chr4:1329578 | G/C | 3.31E-8 | 483 | 16.37 | 14.27 | 16.87 | KM Plot |
THCA | rs1853966 | chr1:157023173 | C/T | 1.65E-7 | 483 | 16.63 | 15.05 | 11.98 | KM Plot |